SCS-C000120
Pavidolide D
Pathway: Terpenoids
Superclass: Diterpenoids
Class: Cembrane diterpenoids
Chemical Structure
Loading 3D structure...
3D conformers are computationally generated from SMILES by RDKit for visualization and download; they are not experimental crystal or NMR structures.
Source Information
Sarcophyton boettgeri
(soft coral)
Kingdom
Metazoa
Phylum
Cnidaria
Class
Anthozoa
Order
Malacalcyonacea
Family
Alcyoniidae
Genus
Sarcophyton
Species
Sarcophyton boettgeri
Weizhou Island
· -20m
DOI:
10.3390/md20100602
· Marine Drugs
Drug-likeness (Lipinski Ro5)
Molecular Weight
306.5 Da
Threshold ≤ 500
ALogP
4.62
Threshold ≤ 5
H-Bond Donors
2
Threshold ≤ 5
H-Bond Acceptors
2
Threshold ≤ 10
Passes Lipinski Rule of Five — drug-like candidate
Chemical Properties
Molecular Formula:
C20H34O2
Molecular Weight:
306.4900 Da
SMILES:
CC1=CCC[C@@](C)(O)[C@H]2CC[C@@](C)(O)[C@@H]2C=C(C(C)C)CC1
InChIKey:
KIEHDNJPINPWIM-MTQWCTHYSA-N
InChI:
InChI=1S/C20H34O2/c1-14(2)16-9-8-15(3)7-6-11-19(4,21)17-10-12-20(5,22)18(17)13-16/h7,13-14,17-18,21-22H,6,8-12H2,1-5H3/t17-,18+,19+,20+/m0/s1
Calculated Properties
ALogP:
4.617 lipophilicity
TPSA:
40.46 Ų polar surface area
H-Bond Donors:
2
H-Bond Acceptors:
2
Rotatable Bonds:
1
Ring Count:
2
(0 aromatic)
Chiral Centers:
4
Fsp³:
0.8000 fraction sp³ carbon
Database Information
Compound ID:
SCS-C000120
NPClassifier Pathway:
Terpenoids
NPClassifier Superclass:
Diterpenoids
NPClassifier Class:
Cembrane diterpenoids
Glycoside:
No
NPClassifier Status:
Classified
External Links:
General chemistry
Natural product databases
Biological Activity Data
Activity values are displayed only when a quantitative or clearly reported result is available.
Tested organisms, cell lines and molecular targets are shown under Target / model.
| Activity | Assay | Target / model | Result | Reference |
|---|---|---|---|---|
| Anti-inflammatory | inhibition_percent | LPS-induced NO release in BV-2 microglial cells | 71.0 ± 1.86 % | 10.3390/md20100602 Marine Drugs |