SCS-C004807
grincamycin D
Pathway: Polyketides
Superclass: Polycyclic aromatic polyketides
Class: Angucyclines
Glycoside
Chemical Structure
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3D conformers are computationally generated from SMILES by RDKit for visualization and download; they are not experimental crystal or NMR structures.
Source Information
Streptomyces lusitanus
(NA)
Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Kitasatosporales
Family
Streptomycetaceae
Genus
Streptomyces
Species
Streptomyces lusitanus
South China Sea
DOI:
10.1021/np2008335
· Journal of Natural Products
Drug-likeness (Lipinski Ro5)
Molecular Weight
822.9 Da
Threshold ≤ 500
ALogP
4.38
Threshold ≤ 5
H-Bond Donors
3
Threshold ≤ 5
H-Bond Acceptors
15
Threshold ≤ 10
2 violations (MW, HBA) — not drug-like by Ro5
Chemical Properties
Molecular Formula:
C43H50O16
Molecular Weight:
822.8570 Da
SMILES:
C[C@@H]1O[C@@H](O[C@H]2CC[C@H](O[C@@](C)(CC(=O)O)Cc3ccc4c(c3O)C(=O)c3ccc([C@H]5C[C@H]6O[C@H]7CC(=O)[C@H](C)O[C@H]7O[C@@H]6[C@@H](C)O5)c(O)c3C4=O)O[C@H]2C)CCC1=O
InChIKey:
RTZAMMXBZUIQSH-HIAMVLHPSA-N
InChI:
InChI=1S/C43H50O16/c1-18-26(44)10-12-33(53-18)57-28-11-13-34(54-20(28)3)59-43(5,17-32(46)47)16-22-6-7-24-35(37(22)48)39(50)25-9-8-23(38(49)36(25)40(24)51)29-15-30-41(21(4)52-29)58-42-31(56-30)14-27(45)19(2)55-42/h6-9,18-21,28-31,33-34,41-42,48-49H,10-17H2,1-5H3,(H,46,47)/t18-,19-,20-,21+,28-,29+,30+,31-,33-,34-,41+,42-,43+/m0/s1
Calculated Properties
ALogP:
4.377 lipophilicity
TPSA:
219.88 Ų polar surface area
H-Bond Donors:
3
H-Bond Acceptors:
15
Rotatable Bonds:
9
Ring Count:
8
(2 aromatic)
Chiral Centers:
13
Fsp³:
0.6047 fraction sp³ carbon
Database Information
Compound ID:
SCS-C004807
NPClassifier Pathway:
Polyketides
NPClassifier Superclass:
Polycyclic aromatic polyketides
NPClassifier Class:
Angucyclines
Glycoside:
Yes
NPClassifier Status:
Classified
External Links:
General chemistry
Natural product databases
Biological Activity Data
No bioactivity data available for this compound.