SCS-C005982
smenospongorine
Pathway: Terpenoids
Superclass: Diterpenoids
Class: Halimane diterpenoids
Chemical Structure
Loading 3D structure...
3D conformers are computationally generated from SMILES by RDKit for visualization and download; they are not experimental crystal or NMR structures.
Source Information
Dysidea sp.
(NA)
Kingdom
Metazoa
Phylum
Porifera
Class
Demospongiae
Order
Dictyoceratida
Family
Dysideidae
Genus
Dysidea
Species
NA
Xisha Islands
· about 20 m
· 16°50′N, 112°20′E
DOI:
10.1248/cpb.c16-00183
· CHEMICAL & PHARMACEUTICAL BULLETIN
Drug-likeness (Lipinski Ro5)
Molecular Weight
399.6 Da
Threshold ≤ 500
ALogP
5.27
Threshold ≤ 5
H-Bond Donors
2
Threshold ≤ 5
H-Bond Acceptors
4
Threshold ≤ 10
1 violation (ALogP) — borderline drug-like
Chemical Properties
Molecular Formula:
C25H37NO3
Molecular Weight:
399.5750 Da
SMILES:
C=C1CCC[C@H]2[C@](C)(CC3=C(O)C(=O)C=C(NCC(C)C)C3=O)[C@@H](C)CC[C@]12C
InChIKey:
HKFPJBYYBSZFCI-CMEURUHUSA-N
InChI:
InChI=1S/C25H37NO3/c1-15(2)14-26-19-12-20(27)23(29)18(22(19)28)13-25(6)17(4)10-11-24(5)16(3)8-7-9-21(24)25/h12,15,17,21,26,29H,3,7-11,13-14H2,1-2,4-6H3/t17-,21+,24+,25+/m0/s1
Calculated Properties
ALogP:
5.269 lipophilicity
TPSA:
66.40 Ų polar surface area
H-Bond Donors:
2
H-Bond Acceptors:
4
Rotatable Bonds:
5
Ring Count:
3
(0 aromatic)
Chiral Centers:
4
Fsp³:
0.6800 fraction sp³ carbon
Database Information
Compound ID:
SCS-C005982
NPClassifier Pathway:
Terpenoids
NPClassifier Superclass:
Diterpenoids
NPClassifier Class:
Halimane diterpenoids
Glycoside:
No
NPClassifier Status:
Classified
External Links:
General chemistry
Natural product databases
Biological Activity Data
Activity values are displayed only when a quantitative or clearly reported result is available.
Tested organisms, cell lines and molecular targets are shown under Target / model.
| Activity | Assay | Target / model | Result | Reference |
|---|---|---|---|---|
| Antibacterial | MIC | Escherichia coli (25922), Bacillus subtilis (6633), Staphylococcus aureus (25923) | 3.125–12.5 μg/mL | 10.1248/cpb.c16-00183 CHEMICAL & PHARMACEUTICAL BULLETIN |